Saturday, June 14, 2025

Sensing a Tiny Crowd

DCP5 uses a curious phase transition to know when things are getting tight inside a cell.

Regulation is the name of the game in life. Once the very bares bones of metabolism and replication were established, the race was on to survive better. And that often means turning on a dime- knowing when to come, when to go, when to live it up, and when to hunker down. Plants can't come and go, so they have rather acute problems of how to deal with the hand (that is, the location) they have been dealt. A big aspect of which is getting water and dealing with lack of water. All life forms have ways to adapt to osmotic stress- that is, any imbalance of water that can be caused by too much salt outside, or drought, or membrane damage. Membranes are somewhat permeable to water, so accommodation to osmotic stress is all about regulating balances of salts and larger ions using active pumps. For example, plant cells usually have pretty high turgor pressure, (often to 30 psi), to pump up their strong cell walls, which helps them stay upright. 

Since cells are filled with large, impermeable molecules like proteins, nucleic acids, and metabolites, the default setting is inward water migration, and thus some turgor pressure. But if excess salts build up outside, or a drought develops, the situation changes. A smart plant cell needs to know what is going on, so it can pump salts inwards (or build up other osmolyte balances) to restore the overall water balance. While osmosensing in other kinds of cells like yeast is understood to some extent, what does so in plants has been somewhat mysterious. (Lots of temperature sensors are known, however.) Yet a recent article laid out an interesting mechanism, based on protein aggregation.

Some cells have direct sensors of membrane tension. Others have complex signaling systems with GPCR proteins that sense osmotic stress. But this new plant mechanism is rather simple, if also trendy. The protein DCP5 is a protein that looks like an RNA-binding protein that participates in stress responses and RNA processing / storage. But in plants, it appears to have an additional power- that of rapid hyper-aggregation when crowded by loss of turgor pressure and cell volume. These aggregates are now understood to be a unique phase of matter, a macromolecular condensate, that is somewhere between liquid and solid. And importantly, they segregate from their surroundings, like oil droplets do from water. The authors did not really discuss what got them interested in this, but this is a known stress-related protein, so once they labeled and visualized it, they must have been struck by its dynamic behavior.

"This condensation was highly dynamic; newly assembled condensates became apparent within 2 min of stress exposure, and the condensation extent is positively correlated with stress severity. ... In cells subjected to continuous hyperosmotic-isosmotic cycles, DCP5 repeatedly switched between condensed and dispersed states."

Titration of an external large molecule, (polyethylene glycol of weight 8000 Daltons, or PEG), which draws water out of a plant cell. The green molecule is DCP5, labeled with GFP, and shows its dramatic condensation with water loss.

Well, great. So the researchers have found a protein in plants that dramatically aggregates under osmotic stress, due to an interesting folding / bistable structure that it has, including a disordered region. Does that make it a water status sensor? And if so, how does it then regulate anything else? 

"In test tube, recombinant DCP5 formed droplets under various artificial crowding conditions generated by polymeric or proteinic crowders. DCP5 droplets emerged even at very low concentrations of PEG8000 (0.01 to 1%), indicating an unusual crowding sensitivity of DCP5."

It turns out that DCP5, aside from binding with its own kind, also drags other proteins into its aggregates, some of which in turn bind to key mRNAs. The ultimate effect is to shield key proteins such as transcription regulators from getting into the nucleus, and shield various mRNAs from translation. In this way, the aggregation system rapidly reprograms the cell to adapt to the new stress.

As one often says in biology and evolution ... whatever it takes! Whether the regulation is by phosphorylation, or proteolysis, or sequestration, or building an enormous brain, any and all roads to regulation are used somewhere to get to where we want to go, which is exquisite sensitivity and responsiveness to our environment, so that we can adapt to it ever faster- far faster than the evolutionary process does.


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